publications

2027

1. TVCG

   Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories

   Siyuan Zhao, Nafiul Nipu, Hossein Fathollahian, and 4 more authors

   IEEE Transactions on Visualization and Computer Graphics, Jan 2027

   Presented at IEEE VIS 2026

   arXiv Bib HTML

   @article{zhao2027loom,
     title = {Loom: Multi-Region Analysis of Spatial Transcriptomics with Local Neighborhoods and Global Trajectories},
     author = {Zhao, Siyuan and Nipu, Nafiul and Fathollahian, Hossein and Karginova, Olga and Chen, Hao and Salahudeen, Ameen and Marai, G. Elisabeta},
     journal = {IEEE Transactions on Visualization and Computer Graphics},
     year = {2027},
     month = jan,
     note = {Presented at IEEE VIS 2026},
   }

2026

1. C&G

   ConGAT: Context-aware graph attention network for 3D region of interest discovery in multiplexed microscopy images

   Hossein Fathollahian, Siyuan Zhao, Nafiul Nipu, and 5 more authors

   Computers & Graphics, Oct 2026

   DOI Bib HTML

   @article{fathollahian2026congat,
     title = {ConGAT: Context-aware graph attention network for 3D region of interest discovery in multiplexed microscopy images},
     author = {Fathollahian, Hossein and Zhao, Siyuan and Nipu, Nafiul and Salahshour, Marziye and Duan, Lei and Tang, Wei and Boorboor, Saeed and Marai, G. Elisabeta},
     journal = {Computers \& Graphics},
     volume = {139},
     pages = {104728},
     year = {2026},
     month = oct,
     publisher = {Elsevier},
     doi = {10.1016/j.cag.2026.104728},
   }

2. SN CS

   Building Collaborative Intelligence: The Translational Journey of the Smart Amplified Group Environment Across Research, Education, and Practice

   Jason Leigh, Luc Renambot, Ryan Theriot, and 8 more authors

   SN Computer Science, Mar 2026

   DOI Bib HTML

   @article{leigh2026sage,
     title = {Building Collaborative Intelligence: The Translational Journey of the Smart Amplified Group Environment Across Research, Education, and Practice},
     author = {Leigh, Jason and Renambot, Luc and Theriot, Ryan and Long, Lance and Lee, Christopher and Harden, Jesse and Kirshenbaum, Nurit and Belcaid, Mahdi and North, Chris and Johnson, Andrew and Brown, Maxine},
     journal = {SN Computer Science},
     volume = {7},
     number = {3},
     pages = {281},
     year = {2026},
     month = mar,
     publisher = {Springer},
     doi = {10.1007/s42979-026-04861-5},
   }